HealthTrackRx’s RT-PCR testing technology gives providers the ability to test for pathogens with greater accuracy across a complete menu of common infections. We make sample collection easy and deliver reporting with antibiotic-resistance genes so patients receive the right treatment the first time.
Comprehensive PCR Testing
HealthTrackRx’s RT-PCR testing technology gives providers the ability to test for pathogens with greater accuracy across a complete menu of common infections. We make sample collection easy and deliver reporting with antibiotic-resistance genes so patients receive the right treatment the first time.
Head-to-Toe PCR Menus
Our pathogen assay covers the most relevant viral, bacterial, and fungal pathogens, providing solutions tailored to your diagnostic needs.
Our Menus
Extended Respiratory Viral / Acute Rhinosinusitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract infection, high-grade fever, acute cough, runny nose, pain in throat, wheezing, or nasal congestion.
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Treatable Respiratory Viruses
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract Infection, high-grade fever, cough, runny nose, pain in throat, wheezing, nasal congestion, shortness of breath, malaise.
Viral:
- COVID-19 Coronavirus (SARS-CoV-2)
- Influenza virus A, B
- Respiratory syncytial virus
Pharyngitis / Laryngitis
Specimen Types:
Oropharynx/Throat/Oral
Common Signs + Symptoms:
Pain in throat, fever, pharyngeal edema, patchy tonsillar exudates, and tender/swollen anterior cervical lymph nodes.
Bacterial:
- Chlamydia pneumoniae
- Fusobacterium nucleatum, necrophorum
- Mycoplasma pneumoniae
- Streptococcus dysgalactiae (Group C & G Strep)
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV), Herpes simplex virus 1, Herpes simplex virus 2
Bronchitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Upper or lower respiratory tract infection, including cough, moderate temperature elevation, and mucopurulent sputum.
Bacterial:
- Haemophilus influenzae
- Moraxella catarrhalis
- Streptococcus pneumoniae
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV)
Pneumonia
Specimen Types:
Cough Sputum, Oropharynx/Throat/Oral, Nasopharyngeal/Nares
Common Signs + Symptoms:
Lower respiratory tract infection, high-grade fever, dyspnea, cough, sputum production, or hypoxia & chest x-ray opacity.
Bacterial:
- Acinetobacter baumannii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Escherichia coli
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Legionella pneumophila
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Acute Otitis Media / Mastoiditis
Specimen Types:
Ear, Nasopharyngeal/Nares
Common Signs + Symptoms:
Otitis media, ear pain, decreased or muffled hearing, bulging ear drum, drainage from ear, mastoiditis, redness or swelling behind ear lobe, fever, headache, or hearing loss.
Bacterial:
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Mycoplasma pneumoniae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Extended Respiratory Viral / Acute Rhinosinusitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract infection, high-grade fever, acute cough, runny nose, pain in throat, wheezing, or nasal congestion.
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Treatable Respiratory Viruses
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Acute upper respiratory tract Infection, high-grade fever, cough, runny nose, pain in throat, wheezing, nasal congestion, shortness of breath, malaise.
Viral:
- COVID-19 Coronavirus (SARS-CoV-2)
- Influenza virus A, B
- Respiratory syncytial virus
Pharyngitis / Laryngitis
Specimen Types:
Oropharynx/Throat/Oral
Common Signs + Symptoms:
Pain in throat, fever, pharyngeal edema, patchy tonsillar exudates, and tender/swollen anterior cervical lymph nodes.
Bacterial:
- Chlamydia pneumoniae
- Fusobacterium nucleatum, necrophorum
- Mycoplasma pneumoniae
- Streptococcus dysgalactiae (Group C & G Strep)
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV), Herpes simplex virus 1, Herpes simplex virus 2
Bronchitis
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Cough Sputum
Common Signs + Symptoms:
Upper or lower respiratory tract infection, including cough, moderate temperature elevation, and mucopurulent sputum.
Bacterial:
- Haemophilus influenzae
- Moraxella catarrhalis
- Streptococcus pneumoniae
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
ADD-ON:
Epstein-Barr Virus (Human Herpesvirus 4, EBV)
Pneumonia
Specimen Types:
Cough Sputum, Oropharynx/Throat/Oral, Nasopharyngeal/Nares
Common Signs + Symptoms:
Lower respiratory tract infection, high-grade fever, dyspnea, cough, sputum production, or hypoxia & chest x-ray opacity.
Bacterial:
- Acinetobacter baumannii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Escherichia coli
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Atypical Bacteria:
- Bordetella pertussis, parapertussis, bronchiseptica
- Chlamydia pneumoniae
- Legionella pneumophila
- Mycoplasma pneumoniae
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Acute Otitis Media / Mastoiditis
Specimen Types:
Ear, Nasopharyngeal/Nares
Common Signs + Symptoms:
Otitis media, ear pain, decreased or muffled hearing, bulging ear drum, drainage from ear, mastoiditis, redness or swelling behind ear lobe, fever, headache, or hearing loss.
Bacterial:
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Mycoplasma pneumoniae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Coronaviruses (229E, HKU1, NL63, & OC43)
- COVID-19 Coronavirus (SARS-CoV-2)
- Enterovirus D68
- Human metapneumovirus
- Influenza virus A, B
- Parainfluenza virus (types 1, 2, 3, 4)
- Respiratory syncytial virus
- Rhinovirus/Enterovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Ophthalmology
Specimen Types:
Eye (external)
Common Signs + Symptoms:
Eye pain, eye redness, blurred vision, sensitivity to light, excessive tearing, and/or eye discharge.
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusarium oxysporum, Neocosmospora solani
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Protozoal:
- Acanthamoeba castellani, polyphaga; Vermamoeba (Hartmannella) vermiformis
- Microsporidia (Encephalitozoon hellum, cuniculi, Nosema (Vittaforma) ocularum)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Ophthalmology
Specimen Types:
Eye (external)
Common Signs + Symptoms:
Eye pain, eye redness, blurred vision, sensitivity to light, excessive tearing, and/or eye discharge.
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusarium oxysporum, Neocosmospora solani
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Protozoal:
- Acanthamoeba castellani, polyphaga; Vermamoeba (Hartmannella) vermiformis
- Microsporidia (Encephalitozoon hellum, cuniculi, Nosema (Vittaforma) ocularum)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Otolaryngology
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Ear, Sino-Nasal
Common Signs + Symptoms:
Chronic or complicated ear, nose, or throat infection.
Bacterial:
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr Virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Otolaryngology
Specimen Types:
Nasopharyngeal/Nares, Oropharynx/Throat/Oral, Ear, Sino-Nasal
Common Signs + Symptoms:
Chronic or complicated ear, nose, or throat infection.
Bacterial:
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Fusobacterium nucleatum, necrophorum
- Haemophilus influenzae
- Klebsiella pneumoniae, oxytoca
- Moraxella catarrhalis
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pneumoniae
- Streptococcus pyogenes (Group A Strep)
Viral:
- Adenovirus
- Cytomegalovirus (Human Herpesvirus 5, CMV)
- Enterovirus (pan)
- Epstein-Barr Virus (Human Herpesvirus 4, EBV)
- Herpes simplex virus 1, 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Fusarium oxysporum, Neocosmospora solani
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Superficial Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Recent wound from trauma with erythema, edema, heat, purulent exudate, and/or pain
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
Mpox (Monkeypox), Herpes simplex virus 1, Herpes simplex virus 2, Varicella zoster virus (Human Herpesvirus 3, VZV)
Deep/Non-Healing Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Diabetic ulcer, tunneling wound, skin erythema, edema, warmth, abscess, or cellulitis
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Corynebacterium jeikeium, striatum, tuberculostearicum
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Peptostreptococcus anaerobius, Peptoniphilus asaccharolyticus, Finegoldia magna, Anaerococcus prevotii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis, saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Tinea
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Scaly ring-shaped area, itchiness, scaly skin, or noninflamed dermatosis on the body or hair follicle (tinea capitis or tinea barbae)
Fungal:
- Candida albicans, glabrata, parapsilosis, tropicalis
- Epidermophyton floccosum
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
ADD-ON:
Candida auris
Superficial Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Recent wound from trauma with erythema, edema, heat, purulent exudate, and/or pain
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
Mpox (Monkeypox), Herpes simplex virus 1, Herpes simplex virus 2, Varicella zoster virus (Human Herpesvirus 3, VZV)
Deep/Non-Healing Wound
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Diabetic ulcer, tunneling wound, skin erythema, edema, warmth, abscess, or cellulitis
Bacterial:
- Acinetobacter baumannii
- Bacteroides fragilis, Phocaeicola vulgatus
- Citrobacter freundii
- Clostridium perfringens, novyi, septicum
- Corynebacterium jeikeium, striatum, tuberculostearicum
- Cutibacterium (Propionibacterium) acnes
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Peptostreptococcus anaerobius, Peptoniphilus asaccharolyticus, Finegoldia magna, Anaerococcus prevotii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis, saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Tinea
Specimen Types:
Wound Swabs (all locations)
Common Signs + Symptoms:
Scaly ring-shaped area, itchiness, scaly skin, or noninflamed dermatosis on the body or hair follicle (tinea capitis or tinea barbae)
Fungal:
- Candida albicans, glabrata, parapsilosis, tropicalis
- Epidermophyton floccosum
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
ADD-ON:
Candida auris
Urinary Tract Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, or pain of micturition
Bacterial:
- Acinetobacter baumannii
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Urinary Tract Infection + High Risk Sexual Behavior
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, pain of micturition, and high risk sexual behavior
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma urealyticum
- Ureaplasma parvum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Urinary Tract Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, or pain of micturition
Bacterial:
- Acinetobacter baumannii
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Urinary Tract Infection + High Risk Sexual Behavior
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, pain of micturition, and high risk sexual behavior
Bacterial:
- Acinetobacter baumannii
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Klebsiella pneumoniae, oxytoca
- Morganella morganii
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma urealyticum
- Ureaplasma parvum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
Onychomycosis
Specimen Types:
Nail (toe), Nail (finger)
Common Signs + Symptoms:
Skin disorder presenting with nail discoloration (yellow, white, or brown), dystrophy (deformed), thickening, onycholysis (separation from nail bed)
Bacterial:
- Pseudomonas aeruginosa
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Cutaneotrichosporon mucoides, Trichosporon asahii
- Epidermophyton floccosum
- Fusarium oxysporum, Neocosmospora solani
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Onychomycosis
Specimen Types:
Nail (toe), Nail (finger)
Common Signs + Symptoms:
Skin disorder presenting with nail discoloration (yellow, white, or brown), dystrophy (deformed), thickening, onycholysis (separation from nail bed)
Bacterial:
- Pseudomonas aeruginosa
Fungal:
- Aspergillus flavus, fumigatus, niger, terreus
- Candida albicans, glabrata, parapsilosis, tropicalis
- Cutaneotrichosporon mucoides, Trichosporon asahii
- Epidermophyton floccosum
- Fusarium oxysporum, Neocosmospora solani
- Malassezia furfur, restricta, sympodialis, globosa
- Microsporum audouinii, canis; Nannizzia gypseum
- Trichophyton mentagrophytes/interdigitale, rubrum, tonsurans, violaceum
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Clostridioides difficile (toxins A, B)
- Clostridium perfringens
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
- Yersinia enterocolitica
Viral:
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
(ALL PARASITES: GSTROAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Traveler's Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Traveler's diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Enteropathogenic E. coli (EPEC)
- Enterotoxigenic E. coli (ETEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
Viral:
- Adenovirus F40/41
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: GSTRPAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Pediatric Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired pediatric diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Adenovirus F40/41
- Astrovirus
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
- Sapovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: PEDGIAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Clostridioides difficile (toxins A, B)
- Clostridium perfringens
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
- Yersinia enterocolitica
Viral:
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
ADD-ON:
(ALL PARASITES: GSTROAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Traveler's Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Traveler's diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Enteroinvasive E. coli (EIEC) / Shigella spp.
- Enteropathogenic E. coli (EPEC)
- Enterotoxigenic E. coli (ETEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
Viral:
- Adenovirus F40/41
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: GSTRPAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Pediatric Diarrheal Disease
Specimen Types:
Rectal (fecal), Stool
Common Signs + Symptoms:
Community-acquired pediatric diarrhea, pt has significant fever + bloody stools, <7 days of symptoms. Concern of parasitic infection if patient has symptoms >14 days.
Bacterial:
- Campylobacter coli, jejuni, upsaliensis
- Enteroaggregative E. coli (EAEC)
- Salmonella
- Shiga toxin producing E. coli (STEC)
- Shiga toxin producing E. coli O157 (STEC O157)
- Vibrio cholerae, parahaemolyticus, vulnificus
Viral:
- Adenovirus F40/41
- Astrovirus
- Norovirus (Genogroup 1, 2)
- Rotavirus A, B, C
- Sapovirus
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
ADD-ON:
(ALL PARASITES: PEDGIAO) Cryptosporidium, Cyclospora cayetanensis, Dientamoeba fragilis, Entamoeba histolytica, Giardia lamblia (intestinalis), Microsporidium (Enterocytozoon bienusi, Encephalitozoon intestinalis)
Urethritis / Discharge
Specimen Types:
Urine (voided), Internal Urethra
Common Signs + Symptoms:
Pain with urination, itching, burning, and discharge
Bacterial:
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Vaginal discharge, odor, itching, irritation, bacterial vaginosis, vulvovaginal candidiasis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Neisseria gonorrhoeae
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Recurrent Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Pain with urination, burning, urethral discharge, vaginal discharge, odor, itching, irritation, or recurrent vaginitis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Genital Lesion
Specimen Types:
Genital Ulcer/Lesion, Vaginal, Cervical/Endometrial, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral, Ulcer/lesion
Common Signs + Symptoms:
Genital ulcer or lesion
Bacterial:
- Chlamydia trachomatis
- Haemophilus ducreyi
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Pelvic Inflammatory Disease
Specimen Types:
Vaginal, Cervical/Endometrial
Common Signs + Symptoms:
Lower abdominal pain, abnormal vaginal bleeding, urinary frequency, and vaginal discharge
Bacterial:
- Actinomyces israelii
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Proctitis
Specimen Types:
Rectal/Anal
Common Signs + Symptoms:
Rectal pain, rectal bleeding, and purulent rectal discharge
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Complicated Genitourinary Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital Skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, fever, abdominal pain, and aerobic vaginitis
Bacterial:
- Acinetobacter baumannii
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Gardnerella vaginalis
- Klebsiella pneumoniae, oxytoca
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Morganella morganii
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma parvum
- Ureaplasma urealyticum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
CGT (Asymptomatic)
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
High risk heterosexual behavior, high risk homosexual behavior, or suspected exposure to a sexually transmitted infection
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
Protozoal:
- Trichomonas vaginalis
Urethritis / Discharge
Specimen Types:
Urine (voided), Internal Urethra
Common Signs + Symptoms:
Pain with urination, itching, burning, and discharge
Bacterial:
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Vaginal discharge, odor, itching, irritation, bacterial vaginosis, vulvovaginal candidiasis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Neisseria gonorrhoeae
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Recurrent Vaginitis
Specimen Types:
Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Urine (voided)
Common Signs + Symptoms:
Pain with urination, burning, urethral discharge, vaginal discharge, odor, itching, irritation, or recurrent vaginitis
Bacterial:
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Gardnerella vaginalis
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Ureaplasma urealyticum
- Ureaplasma parvum
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Genital Lesion
Specimen Types:
Genital Ulcer/Lesion, Vaginal, Cervical/Endometrial, Rectal/Anal/Peri-Anal, Oropharynx/Throat/Oral, Ulcer/lesion
Common Signs + Symptoms:
Genital ulcer or lesion
Bacterial:
- Chlamydia trachomatis
- Haemophilus ducreyi
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
- Varicella zoster virus (Human Herpesvirus 3, VZV)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Pelvic Inflammatory Disease
Specimen Types:
Vaginal, Cervical/Endometrial
Common Signs + Symptoms:
Lower abdominal pain, abnormal vaginal bleeding, urinary frequency, and vaginal discharge
Bacterial:
- Actinomyces israelii
- Chlamydia trachomatis
- Mycoplasma genitalium
- Mycoplasma hominis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Proctitis
Specimen Types:
Rectal/Anal
Common Signs + Symptoms:
Rectal pain, rectal bleeding, and purulent rectal discharge
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
- Treponema pallidum (Syphilis)
Viral:
- Herpes simplex virus 1
- Herpes simplex virus 2
- Mpox (Monkeypox)
Resistance:
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- tet B, tet M
Complicated Genitourinary Infection
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital Skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
Dysuria, hematuria, urgency of urination, frequency of micturition, fever, abdominal pain, and aerobic vaginitis
Bacterial:
- Acinetobacter baumannii
- Atopobium vaginae
- BVAB2, 3 (Bacterial vaginosis-associated bacteria 2, 3); Mobiluncus spp.
- Chlamydia trachomatis
- Citrobacter freundii
- Enterobacter cloacae complex, Klebsiella (Enterobacter) aerogenes
- Enterococcus faecalis, faecium
- Escherichia coli
- Gardnerella vaginalis
- Klebsiella pneumoniae, oxytoca
- Megasphaera (types 1, 2)
- Mycoplasma genitalium
- Mycoplasma hominis
- Morganella morganii
- Neisseria gonorrhoeae
- Proteus mirabilis, vulgaris
- Pseudomonas aeruginosa
- Serratia marcescens
- Staphylococcus aureus
- Staphylococcus epidermidis, haemolyticus, lugdunensis
- Staphylococcus saprophyticus
- Streptococcus agalactiae (Group B Strep)
- Streptococcus pyogenes (Group A Strep)
- Ureaplasma parvum
- Ureaplasma urealyticum
Protozoal:
- Trichomonas vaginalis
Fungal:
- Candida albicans, parapsilosis, tropicalis
- Candida glabrata (Nakaseomyces glabratus)
- Candida krusei (Pichia kudriavzevii)
Resistance:
- ACT, MIR, FOX, ACC Groups
- CTX-M1 (15), M2 (2), M9 (9), M8/25 Groups
- dfr (A1, A5), sul (1, 2)
- ermB, C; mefA
- IMP, NDM, VIM Groups
- mecA
- OXA-48, OXA-51
- qnrA1, A2, B2
- SHV, KPC Groups
- tet B, tet M
- VanA, VanB
CGT (Asymptomatic)
Specimen Types:
Urine (voided), Urine (catheter), Internal Urethra, Vaginal, Cervical/Endometrial, Vulva/Labia/Vestibule/Perineal, Rectal/Anal, Penile Meatus, Genital skin, Oropharynx/Throat/Oral
Common Signs + Symptoms:
High risk heterosexual behavior, high risk homosexual behavior, or suspected exposure to a sexually transmitted infection
Bacterial:
- Chlamydia trachomatis
- Neisseria gonorrhoeae
Protozoal:
- Trichomonas vaginalis
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